Command Line Interface

Mutalyzer HGVS variant description parser.

usage: mutalyzer_hgvs_parser [-h] [-c] [-r R] [-g G] [-p] [-i I] [-v]
                             description

Positional Arguments

description

the HGVS variant description to be parsed

Named Arguments

-c	convert the description to the model Default: False
-r	alternative start (top) rule for the grammar
-g	alternative input grammar file path (do not use with -c)
-p	raw parse tree (no ambiguity solving) Default: False
-i	save the parse tree as a PNG image (pydot required!)
-v	show program’s version number and exit

Copyright (c) Mihai Lefter <M.Lefter@lumc.nl>