Command Line Interface

Mutalyzer HGVS variant description parser.

usage: mutalyzer_hgvs_parser [-h] [-c] [-r R] [-g G] [-p] [-i I] [-v]
                             description

Positional Arguments

description

the HGVS variant description to be parsed

Named Arguments

-c

convert the description to the model

Default: False

-r

alternative start (top) rule for the grammar

-g

alternative input grammar file path (model conversion not supported)

-p

raw parse tree (no ambiguity solving)

Default: False

-i

save the parse tree as a PNG image (pydot required!)

-v

show program’s version number and exit

Copyright (c) Mihai Lefter <M.Lefter@lumc.nl>